Paychex vs QuickBooks Payroll

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Our analysts compared Paychex vs QuickBooks Payroll based on data from our 400+ point analysis of Payroll Software, user reviews and our own crowdsourced data from our free software selection platform.

Product Basics

Paychex provides payment processing, time-keeping and other general human resource software. They offer this to self-employed users, small businesses, medium business and large enterprise ventures. Buyers can choose from various pricing plans and payment options such as direct deposit, real-time transfers and same-day ACH. Most versions have some core HR management and pay processing functionalities.

Based in the cloud, it assists with hiring, onboarding, tax filing, benefits management, business insurance, startup services and more. Users can customize it to meet their specific needs, adding only what they use. This allows administrators to ensure it fits their requirements, whether they be simple or complex.
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Quickbooks is an Intuit payroll and accounting solution designed to meet the needs of both small and medium-sized, growing businesses. There are a variety of plans, starting with small packages built for independent contractors and self-employed individuals. It handles payment, calculating and filing taxes, benefits management, direct deposits and more.

The variety of products and packages enables users to find a solution that fits a company’s unique needs. Quickbooks offers specialized features for organizations in a variety of fields, including manufacturing and retail. Overall, it serves 1.4 million businesses.
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$39 Monthly
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$37.50 Monthly
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Tailored to your specific needs
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Chromebook
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On-Premise
Mobile
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On-Premise
Mobile

Product Assistance

Documentation
In Person
Live Online
Videos
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Live Online
Videos
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Email
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FAQ
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24/7 Live Support
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Product Insights

  • Reduce Errors: Ensure accuracy in payroll processing with the help of a variety of safeguard features, such as sending managers notifications when the system detects potential issues so that these problems are avoided entirely.
  • User Support: Access 24/7 online support to assist with all aspects of processing, and the option for a dedicated specialist that can act as a personal support expert for both payment and tax needs.
  • Convenience: The mobile app enables employers and employees to access the system from any device. By leveraging the cloud, they can start work on a desktop and pick up right where they left off directly from their mobile device, allowing them to complete core tasks from anywhere.
  • Informed Employees: Employees can get information about their time off, upcoming paychecks, benefits information or retirement funds. This saves time from HR and accounting by answering their more pressing questions while also building transparency and trust in the entire process.
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  • Save Time: Connects with bank accounts and syncs with various apps to help streamline payroll processing. Saves users more than 40 hours monthly on average and spares them from tedious manual data entry.
  • Save Money: Saves the average users more than $3,500 annually through its assistance with tax filing and other processes.
  • Easy-to-Use: Provides a simple interface so HR managers and others can store and access relevant accounting information easily. Centralizes and organizes data, making it simple to access.
  • Simplified Administration: Manages benefits, payments, time tracking, workers’ compensation, inventory, compliance and other essential business functions from one location. Simplifies processes and handles all of them through one solution.
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  • Products: It has many different products for different applications. Here are the most important:
    • Payroll: The platform offers payment for businesses with one employee, under 10 employees, from 10-49 employees and from 50 to over 1,000 workers. This includes online payroll, taxes, deductions and many tools to generate reports and look at costs.
    • Time and Attendance: The online time and attendance function ties in directly to payroll, saving time when trying to calculate paychecks. In addition to the software, it also offers TrueShift physical time clocks and the InVision iris recognition clocks. Users can track team activity in real time through the manager’s dashboard, and allow employees to record time, approve timecards and check schedules through the employee dashboard.
    • HR: It has a range of HR services and software including employee development, hiring, records administration, compliance, benefits administration, learning management and more.
      • Professional Employer Organization: This is a full-service HR consulting program that helps organizations with liability issues, daily worker problems, risk management, benefits administration and other related issues.
      • Hiring Service: The software can make the hiring process easier with applicant tracking, screening, recruiting and onboarding capabilities. Please note, they don’t have employee leasing, temp staffing or contract staff services.
      • Employee Benefits: Managers and workers alike can get access to health insurance for groups or individuals, financial wellness and retirement planning.
    • Business Insurance: Users can get property and casualty insurance with the help of agents who assist in the selection and implementation process for the new benefits. This includes business owner policies, cyber liability and workers’ compensation.
    • Finances and Payments: Besides payroll, this program also has business loans, expense management, tax administration and processing for payments.
    • Startup Solutions: For new businesses, it offers guides, consulting, advice and more for multiple aspects of the process. They give aid with marketing, the incorporation process, business management and access to free online tools.
  • Payroll and Tax Filing: Process payroll and automatically calculate taxes. Paychex can calculate, file and pay taxes at the federal, state and local level automatically. The platform can calculate hours, doing setup for direct deposit and setting hours per pay period.
  • General Ledger: Synchronize payroll data with integrations offered by Paychex. The system is compatible with a variety of popular accounting systems, including QuickBooks Online and Xero.
  • Reporting and Analytics: Generate custom analytics and reports or choose from over 160 customizable templates to track and visualize relevant data.
  • Learning and Development: Employees can take advantage of online courses to stay educated on relevant topics. Not only does this increase productivity, but it makes employees feel more invested in.
  • Core HR: It gives employee feedback, manages employee training and tracks important documents through the system’s interface.
  • Onboarding: Applicants and new hires can complete new hire documents, such as tax forms, and set up direct deposit directly through the platform.
  • Paycheck Protection Program: Introduced by the CARES Act as a measure for economic stability during the COVID pandemic, the Paycheck Protection Program loans encourage small businesses to keep or rehire workers that have been furloughed. This system offers a quick way to apply for this loan.
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  • Payroll Processing: Operate 24-hour direct deposit. Pay employees, access integration services for employees, calculate taxes automatically and file taxes directly through the system. Automate payments to save time.
  • Benefits Management: Administrate workers’ compensation, health insurance, retirement plans and more. Covers workers’ compensation through AP Intego. Offers medical, dental and vision insurance through SimplyInsured. Compare different plans to judge the coverage, value and deductibles and make informed decisions. Calculates deductions for health, medical and dental automatically. Deducts and calculates contributions for 401(k)s from each employee paycheck.
  • Mobile Capabilities: Create, track and send invoices via smartphone as well as payment reminders.
  • Workers’ Compensation: Manage workers’ comp, understand state requirements and laws and pick a policy through AP Intego. Provides a free quote and automates premiums.
  • Inventory: Import information from Excel and sync with Amazon, Etsy and other similar websites to track products, cost of goods, create purchase orders and manage vendors.
  • HR Management and Compliance: Provides HR resources and consultation to help with compliance through Mammoth Inc. Creates forms from templates for onboarding checklists, employee handbooks and job descriptions. Aids in creating policies, obeying HR laws, hiring and conflict management.
  • Time Tracking: Track and add billable hours to invoices. Review and put a stamp of approval on employee timesheets. Provides tracking through TSheets. Link hours to specific jobs, save time during payment processing and see real-time insights into employee work hours. Approve and enter employee time cards.
  • Reporting: Run and export a variety of reports. Create customizable reports for balance sheets, expenses and tracking profit and loss. Create, export, print and customize reports to share with accountants or critical stakeholders. Covers deductions, tax liability, contributions, more than one worksite, summary for taxes and wages, vacation, workers’ compensation and sick leave.
  • Taxes: Helps users find tax deductions. Store photos of receipts, share books with accountants and sort business expenses by tax categories to help streamline tax filing.
  • Penalty Payments: Covers payments of up to $25,000 if errors in local, state or federal taxes result in a penalty. Communicates with the IRS. Reviews taxes with experts before sending them to the IRS to cut off issues before they start. Doesn’t cover specific penalties in some situations such as fraud, insufficient funds, healthcare administration, employee classification and several others.
  • Project Tracking: Track project details such as labor costs, expenses and profits.
  • Payroll Plans: Offers three separate plans for payroll needs.
    • Core: Provides core functionality such as payment and calculating payroll taxes.
    • Premium: Covers team management and provides more powerful tools and services for payroll.
    • Elite: Gives access to experts on-demand to answer payroll questions. Gives access to tax penalty protection.
  • Implementation: Aids in transferring current payroll information to the new system. Provides expert support to help users with initial setup and compliance.
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Product Ranking

#4

among all
Payroll Software

#47

among all
Payroll Software

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Analyst Rating Summary

90
84
94
38
100
92
100
74
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Dashboard and Reporting
Expense Management
Platform Capabilities
Security and Compliance
Benefits Management
Mobile Capabilities
Dashboard and Reporting
Payroll and Tax Management
Time and Attendance Management

Analyst Ratings for Functional Requirements Customize This Data Customize This Data

Paychex
QuickBooks Payroll
+ Add Product + Add Product
Benefits Management Dashboard And Reporting Expense Management Mobile Capabilities Payroll And Tax Management Platform Capabilities Security And Compliance Time And Attendance Management 94 100 100 81 90 100 100 91 38 92 74 94 91 75 80 91 0 25 50 75 100
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Analyst Ratings for Technical Requirements Customize This Data Customize This Data

71%
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29%
64%
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36%

User Sentiment Summary

Great User Sentiment 2800 reviews
Great User Sentiment 626 reviews
83%
of users recommend this product

Paychex has a 'great' User Satisfaction Rating of 83% when considering 2800 user reviews from 4 recognized software review sites.

89%
of users recommend this product

QuickBooks Payroll has a 'great' User Satisfaction Rating of 89% when considering 626 user reviews from 4 recognized software review sites.

4.5 (24)
4.7 (17)
4.2 (1342)
4.0 (25)
4.1 (1122)
n/a
n/a
4.5 (550)
3.9 (312)
3.5 (34)

Awards

SelectHub research analysts have evaluated Paychex and concluded it deserves the award for the Best Overall Payroll Software available today and earns best-in-class honors for Expense Management and Platform Capabilities.

Analysts' Pick Award
Expense Management Award
Platform Capabilities Award

SelectHub research analysts have evaluated QuickBooks Payroll and concluded it earns best-in-class honors for Mobile Capabilities.

Mobile Capabilities Award

Synopsis of User Ratings and Reviews

User-Friendly UI: A total of 80% of reviewers who mentioned the UI felt it easy to use.
Price Within Budget: Around 50% of reviewers that mentioned price were satisfied with the pricing structure and found that the system was worth it.
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Excellent Functionality: Over 90% of users that discussed functionality were happy with the features, including the tax filing, automation and employee salaries and hours functions.
Simple to Use: Reviewers that talked about the ease of use felt it had a simple and intuitive interface over 80% of the time.
Manage Salary and Hours: More than 80% who discussed the employee time tracking and salary functions felt it worked well.
Affordable: Just under 70% of users who discussed price felt it was an affordable option.
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Late Submissions and Missed Deadlines: Around 80% of reviewers that mentioned taxes ran into issues, with around 70% saying they had to pay penalties as a result.
Terrible Customer Service: Clients complained that the customer service was rude, unqualified, ill-informed, unhelpful and had high turnover in almost 70% of reviews that mentioned customer service.
Broken Features: Over 50% of reviews that mentioned the features said they were left wanting. The most common issues were communication problems. Just under 20% of all reviewers complained about errors made by either the solution or the staff.
Late Cancellations: Around 20% of reviewers that discussed price complained that they had canceled the program, but it had kept taking money out of their account.
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Bad for Large Organizations: Over 90% of reviewers that discussed using the system for big organizations felt the system wasn’t complex enough.
Mixed Customer Service: Users were split on customer support quality, with 52% approving and 48% disliking the service.
Issues with Price: While overall, reviewers that discussed price felt it affordable, over 30% were displeased and said they got overcharged or billed after they’d already canceled.
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Paychex incorporates a range of different solutions and is used widely by small, medium and large-sized companies. While around 40% of users were happy with the functionality of the system, the majority expressed dissatisfaction with its tax capabilities, pricing and customer service. Many described it as dishonest and complained especially that they were oversold on its capabilities and that the salespeople used pushy tactics to try and upsell them. Other complaints of the system included making errors, overpaying employees or even miscalculating taxes resulting in serious penalties. Current and former clients greatly disliked the service. The UI was the most positively reviewed element of the platform with around 80% expressing satisfaction with the design and navigation. Around 50% were happy with the pricing structure and a minority of around 30% of users said they had positive experiences with some select customer service members. This disparity in experiences may be in part to the high turnover rate in representatives which is mentioned many times during the reviews. This solution could be appropriate for small and medium-sized businesses. It supports larger enterprises, but buyers should make sure it has the necessary functionality before purchasing.

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Quickbooks Payroll is part of the Intuit suite of programs. Commenters felt it was easy to use, train and adopt with a simple interface that worked well. They found it affordable and found the integrations of time tracking with employee salaries made running payroll a quick process. Commenters said it was reasonably priced and the features worked well. The most popular functionality included automation, tax calculations and filing, and its ability to centralize and organize data. The largest complaint by far was that this program isn’t complex enough for larger organizations. Reviewers recommended only using it for small organizations. Reactions to customer service were very mixed. Reviewers who were satisfied said the support workers got back to them quickly, were friendly, helpful and called back promptly. Other users had adverse reactions say the staff was incompetent, complaining that there was only chat support and complained of always getting different answers. While most were pleased with the price, some reported getting overcharged and said it was difficult to cancel with charges showing up well after they’d terminated the service. Quickbooks Payroll is a good choice for small and medium-sized businesses. Be sure to understand what functionality comes with which pricing plan before purchasing.

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